How to run aspnet_regiis.exe with on site other than w3svc/1?

C:\WINDOWS\Microsoft.NET\Framework\v2.0.50727>aspnet_regiis.exe /lk
W3SVC/ 1.1.4322.2300
W3SVC/1029688701/root/ 1.1.4322.2300
W3SVC/1156445961/root/ 1.1.4322.2300
W3SVC/1283203219/root/ 1.1.4322.2300
W3SVC/1444110353/root/ 2.0.50727.0

The app that I am trying to encrypt is on W3SVC/1444110353/root/
I want to run the following:

%windir%\Microsoft.NET\Framework\v2.0.50727\aspnet_regiis.exe -prov
"DataProtectionConfigurationProvider" -pe "Credentials"

But it appears that it tries to do that on W3SVC/. I tried:

%windir%\Microsoft.NET\Framework\v2.0.50727\aspnet_regiis.exe -prov
"DataProtectionConfigurationProvider" -pe "Credentials" -app "W3SVC/
1444110353/root/"

But that doesn't work because -app only looks for the virtual dir on
w3svc.

Anyone have any ideas?

I can't use the -pef parameter because it cannot find the config
section handler that other posts have touched on.

.

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